J5_5U9F_010
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 5U9F|1|01|A|2062, 5U9F|1|01|A|2448, 5U9F|1|01|U|2449, 5U9F|1|01|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5U9F|1|01|G|2057
5U9F|1|01|A|2058
5U9F|1|01|A|2059
5U9F|1|01|A|2060
5U9F|1|01|G|2061
5U9F|1|01|A|2062
5U9F|1|01|C|2063
5U9F|1|01|C|2064
*
5U9F|1|01|G|2446
5U9F|1|01|G|2447
5U9F|1|01|A|2448
5U9F|1|01|U|2449
5U9F|1|01|A|2450
5U9F|1|01|A|2451
5U9F|1|01|C|2452
5U9F|1|01|A|2453
*
5U9F|1|01|U|2500
5U9F|1|01|C|2501
5U9F|1|01|G|2502
5U9F|1|01|A|2503
5U9F|1|01|U|2504
5U9F|1|01|G|2505
5U9F|1|01|U|2506
*
5U9F|1|01|G|2583
5U9F|1|01|U|2584
5U9F|1|01|U|2585
5U9F|1|01|U|2586
5U9F|1|01|A|2587
5U9F|1|01|G|2588
*
5U9F|1|01|C|2606
5U9F|1|01|G|2607
5U9F|1|01|G|2608
5U9F|1|01|U|2609
5U9F|1|01|C|2610
5U9F|1|01|C|2611
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 04
- 50S ribosomal protein L2
- Chain 05
- 50S ribosomal protein L3
- Chain 06
- 50S ribosomal protein L4
- Chain 14
- 50S ribosomal protein L15
- Chain 15
- 50S ribosomal protein L16
- Chain 21
- 50S ribosomal protein L22
- Chain 30
- 50S ribosomal protein L32
- Chain W
- Transfer RNA; tRNA
- Chain Z
- Peptide chain release factor RF2
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