J5_5UYK_001

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5UYK|1|01|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5UYK_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1025

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5UYK|1|01|C|47
5UYK|1|01|G|48
5UYK|1|01|A|49
5UYK|1|01|U|50
5UYK|1|01|G|51
5UYK|1|01|A|52
5UYK|1|01|A|53
5UYK|1|01|G|54
*
5UYK|1|01|C|116
5UYK|1|01|G|117
5UYK|1|01|A|118
5UYK|1|01|A|119
5UYK|1|01|U|120
5UYK|1|01|G|121
*
5UYK|1|01|C|130
5UYK|1|01|A|131
*
5UYK|1|01|U|148
5UYK|1|01|A|149
5UYK|1|01|U|150
*
5UYK|1|01|A|176
5UYK|1|01|G|177
5UYK|1|01|G|178

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 32

50S ribosomal protein L34