J5_5UYM_001

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5UYM|1|01|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5UYM_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0846

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5UYM|1|01|C|47
5UYM|1|01|G|48
5UYM|1|01|A|49
5UYM|1|01|U|50
5UYM|1|01|G|51
5UYM|1|01|A|52
5UYM|1|01|A|53
5UYM|1|01|G|54
*
5UYM|1|01|C|116
5UYM|1|01|G|117
5UYM|1|01|A|118
5UYM|1|01|A|119
5UYM|1|01|U|120
5UYM|1|01|G|121
*
5UYM|1|01|C|130
5UYM|1|01|A|131
*
5UYM|1|01|U|148
5UYM|1|01|A|149
5UYM|1|01|U|150
*
5UYM|1|01|A|176
5UYM|1|01|G|177
5UYM|1|01|G|178

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 32

50S ribosomal protein L34