3D structure

PDB id
5UYM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
5UYM|1|01|A|2062, 5UYM|1|01|A|2448, 5UYM|1|01|U|2449, 5UYM|1|01|U|2609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5UYM|1|01|G|2057
5UYM|1|01|A|2058
5UYM|1|01|A|2059
5UYM|1|01|A|2060
5UYM|1|01|G|2061
5UYM|1|01|A|2062
5UYM|1|01|C|2063
5UYM|1|01|C|2064
*
5UYM|1|01|G|2446
5UYM|1|01|G|2447
5UYM|1|01|A|2448
5UYM|1|01|U|2449
5UYM|1|01|A|2450
5UYM|1|01|A|2451
5UYM|1|01|C|2452
5UYM|1|01|A|2453
*
5UYM|1|01|U|2500
5UYM|1|01|C|2501
5UYM|1|01|G|2502
5UYM|1|01|A|2503
5UYM|1|01|U|2504
5UYM|1|01|G|2505
5UYM|1|01|U|2506
5UYM|1|01|C|2507
*
5UYM|1|01|G|2582
5UYM|1|01|G|2583
5UYM|1|01|U|2584
5UYM|1|01|U|2585
5UYM|1|01|U|2586
5UYM|1|01|A|2587
5UYM|1|01|G|2588
*
5UYM|1|01|C|2606
5UYM|1|01|G|2607
5UYM|1|01|G|2608
5UYM|1|01|U|2609
5UYM|1|01|C|2610
5UYM|1|01|C|2611

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 04
50S ribosomal protein L2
Chain 05
50S ribosomal protein L3
Chain 06
50S ribosomal protein L4
Chain 14
50S ribosomal protein L15
Chain 15
50S ribosomal protein L16
Chain 21
50S ribosomal protein L22
Chain 30
50S ribosomal protein L32
Chain W
Transfer RNA; tRNA

Coloring options:

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