J5_5UYQ_001

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5UYQ|1|01|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5UYQ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1233

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5UYQ|1|01|C|47
5UYQ|1|01|G|48
5UYQ|1|01|A|49
5UYQ|1|01|U|50
5UYQ|1|01|G|51
5UYQ|1|01|A|52
5UYQ|1|01|A|53
5UYQ|1|01|G|54
*
5UYQ|1|01|C|116
5UYQ|1|01|G|117
5UYQ|1|01|A|118
5UYQ|1|01|A|119
5UYQ|1|01|U|120
5UYQ|1|01|G|121
*
5UYQ|1|01|C|130
5UYQ|1|01|A|131
*
5UYQ|1|01|U|148
5UYQ|1|01|A|149
5UYQ|1|01|U|150
*
5UYQ|1|01|A|176
5UYQ|1|01|G|177
5UYQ|1|01|G|178

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 32

50S ribosomal protein L34