J5_5UYQ_005

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

5UYQ|1|01|A|2062, 5UYQ|1|01|A|2448, 5UYQ|1|01|U|2449, 5UYQ|1|01|G|2505, 5UYQ|1|01|U|2609, 5UYQ|1|01|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UYQ|1|01|G|2057
5UYQ|1|01|A|2058
5UYQ|1|01|A|2059
5UYQ|1|01|A|2060
5UYQ|1|01|G|2061
5UYQ|1|01|A|2062
5UYQ|1|01|C|2063
5UYQ|1|01|C|2064
*
5UYQ|1|01|G|2446
5UYQ|1|01|G|2447
5UYQ|1|01|A|2448
5UYQ|1|01|U|2449
5UYQ|1|01|A|2450
5UYQ|1|01|A|2451
5UYQ|1|01|C|2452
5UYQ|1|01|A|2453
*
5UYQ|1|01|U|2500
5UYQ|1|01|C|2501
5UYQ|1|01|G|2502
5UYQ|1|01|A|2503
5UYQ|1|01|U|2504
5UYQ|1|01|G|2505
5UYQ|1|01|U|2506
5UYQ|1|01|C|2507
*
5UYQ|1|01|G|2582
5UYQ|1|01|G|2583
5UYQ|1|01|U|2584
5UYQ|1|01|U|2585
5UYQ|1|01|U|2586
5UYQ|1|01|A|2587
5UYQ|1|01|G|2588
*
5UYQ|1|01|C|2606
5UYQ|1|01|G|2607
5UYQ|1|01|G|2608
5UYQ|1|01|U|2609
5UYQ|1|01|C|2610
5UYQ|1|01|C|2611

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain 05

50S ribosomal protein L3

Chain 06

50S ribosomal protein L4

Chain 14

50S ribosomal protein L15

Chain 15

50S ribosomal protein L16

Chain 21

50S ribosomal protein L22

Chain 30

50S ribosomal protein L32

Chain W

Transfer RNA; tRNA