J5_5V93_002

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAGCA*UGUGAAUCCGC*GUAAG

Length

39 nucleotides

Bulged bases

5V93|1|A|U|319, 5V93|1|A|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|A|C|270
5V93|1|A|U|271
5V93|1|A|A|272
5V93|1|A|A|273
5V93|1|A|A|274
5V93|1|A|C|275
*
5V93|1|A|G|313
5V93|1|A|G|314
5V93|1|A|G|315
5V93|1|A|U|316
5V93|1|A|U|317
5V93|1|A|G|318
5V93|1|A|U|319
5V93|1|A|G|320
*
5V93|1|A|C|458
5V93|1|A|G|459
5V93|1|A|A|460
5V93|1|A|G|461
5V93|1|A|U|462
5V93|1|A|A|463
5V93|1|A|G|464
5V93|1|A|C|465
5V93|1|A|A|466
*
5V93|1|A|U|486
5V93|1|A|G|487
5V93|1|A|U|488
5V93|1|A|G|489
5V93|1|A|A|490
5V93|1|A|A|491
5V93|1|A|U|492
5V93|1|A|C|493
5V93|1|A|C|494
5V93|1|A|G|495
5V93|1|A|C|496
*
5V93|1|A|G|509
5V93|1|A|U|510
5V93|1|A|A|511
5V93|1|A|A|512
5V93|1|A|G|513

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28