J5_5V93_006

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACUCGGCAAAAUGC*GA*UC*GAAACCAGUG*CAACUGU

Length

35 nucleotides

Bulged bases

5V93|1|A|A|1992, 5V93|1|A|G|1997, 5V93|1|A|G|2230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|A|A|1904
5V93|1|A|C|1905
5V93|1|A|U|1906
5V93|1|A|C|1907
5V93|1|A|G|1908
5V93|1|A|G|1909
5V93|1|A|C|1910
5V93|1|A|A|1911
5V93|1|A|A|1912
5V93|1|A|A|1913
5V93|1|A|A|1914
5V93|1|A|U|1915
5V93|1|A|G|1916
5V93|1|A|C|1917
*
5V93|1|A|G|1941
5V93|1|A|A|1942
*
5V93|1|A|U|1985
5V93|1|A|C|1986
*
5V93|1|A|G|1990
5V93|1|A|A|1991
5V93|1|A|A|1992
5V93|1|A|A|1993
5V93|1|A|C|1994
5V93|1|A|C|1995
5V93|1|A|A|1996
5V93|1|A|G|1997
5V93|1|A|U|1998
5V93|1|A|G|1999
*
5V93|1|A|C|2225
5V93|1|A|A|2226
5V93|1|A|A|2227
5V93|1|A|C|2228
5V93|1|A|U|2229
5V93|1|A|G|2230
5V93|1|A|U|2231

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19

Chain a

Small subunit ribosomal RNA; SSU rRNA