J5_5V93_007
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUCG*UGGGUUUAG*CGGUCU
- Length
- 40 nucleotides
- Bulged bases
- 5V93|1|A|A|2300, 5V93|1|A|A|2686, 5V93|1|A|U|2687, 5V93|1|A|G|2743, 5V93|1|A|U|2823, 5V93|1|A|U|2847
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5V93|1|A|A|2295
5V93|1|A|A|2296
5V93|1|A|A|2297
5V93|1|A|A|2298
5V93|1|A|G|2299
5V93|1|A|A|2300
5V93|1|A|C|2301
5V93|1|A|C|2302
*
5V93|1|A|G|2684
5V93|1|A|G|2685
5V93|1|A|A|2686
5V93|1|A|U|2687
5V93|1|A|A|2688
5V93|1|A|A|2689
5V93|1|A|C|2690
5V93|1|A|A|2691
*
5V93|1|A|U|2738
5V93|1|A|C|2739
5V93|1|A|G|2740
5V93|1|A|A|2741
5V93|1|A|U|2742
5V93|1|A|G|2743
5V93|1|A|U|2744
5V93|1|A|C|2745
5V93|1|A|G|2746
*
5V93|1|A|U|2818
5V93|1|A|G|2819
5V93|1|A|G|2820
5V93|1|A|G|2821
5V93|1|A|U|2822
5V93|1|A|U|2823
5V93|1|A|U|2824
5V93|1|A|A|2825
5V93|1|A|G|2826
*
5V93|1|A|C|2844
5V93|1|A|G|2845
5V93|1|A|G|2846
5V93|1|A|U|2847
5V93|1|A|C|2848
5V93|1|A|U|2849
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
Coloring options: