J5_5V93_008
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUCACUACAACUUG*CUGGCGGGUAGUUUAACUGGGGCGGUUG*CGCC*GAUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 73 nucleotides
- Bulged bases
- 5V93|1|A|C|2313, 5V93|1|A|G|2488, 5V93|1|A|A|2626, 5V93|1|A|U|2628, 5V93|1|A|G|2666, 5V93|1|A|A|2668
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5V93|1|A|U|2311
5V93|1|A|U|2312
5V93|1|A|C|2313
5V93|1|A|A|2314
5V93|1|A|C|2315
5V93|1|A|U|2316
5V93|1|A|A|2317
5V93|1|A|C|2318
5V93|1|A|A|2319
5V93|1|A|A|2320
5V93|1|A|C|2321
5V93|1|A|U|2322
5V93|1|A|U|2323
5V93|1|A|G|2324
*
5V93|1|A|C|2470
5V93|1|A|U|2471
5V93|1|A|G|2472
5V93|1|A|G|2473
5V93|1|A|C|2474
5V93|1|A|G|2475
5V93|1|A|G|2476
5V93|1|A|G|2477
5V93|1|A|U|2478
5V93|1|A|A|2479
5V93|1|A|G|2480
5V93|1|A|U|2481
5V93|1|A|U|2482
5V93|1|A|U|2483
5V93|1|A|A|2484
5V93|1|A|A|2485
5V93|1|A|C|2486
5V93|1|A|U|2487
5V93|1|A|G|2488
5V93|1|A|G|2489
5V93|1|A|G|2490
5V93|1|A|G|2491
5V93|1|A|C|2492
5V93|1|A|G|2493
5V93|1|A|G|2494
5V93|1|A|U|2495
5V93|1|A|U|2496
5V93|1|A|G|2497
*
5V93|1|A|C|2519
5V93|1|A|G|2520
5V93|1|A|C|2521
5V93|1|A|C|2522
*
5V93|1|A|G|2622
5V93|1|A|A|2623
5V93|1|A|U|2624
5V93|1|A|U|2625
5V93|1|A|A|2626
5V93|1|A|G|2627
5V93|1|A|U|2628
5V93|1|A|G|2629
5V93|1|A|A|2630
5V93|1|A|U|2631
5V93|1|A|C|2632
5V93|1|A|C|2633
*
5V93|1|A|G|2659
5V93|1|A|C|2660
5V93|1|A|U|2661
5V93|1|A|C|2662
5V93|1|A|A|2663
5V93|1|A|A|2664
5V93|1|A|C|2665
5V93|1|A|G|2666
5V93|1|A|G|2667
5V93|1|A|A|2668
5V93|1|A|U|2669
5V93|1|A|A|2670
5V93|1|A|A|2671
5V93|1|A|A|2672
5V93|1|A|A|2673
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
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