J5_5VPO_004

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5VPO|1|RA|U|271|||C, 5VPO|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPO|1|RA|C|268
5VPO|1|RA|U|269
5VPO|1|RA|A|270
5VPO|1|RA|A|270|||A
5VPO|1|RA|A|270|||B
5VPO|1|RA|C|270|||C
*
5VPO|1|RA|G|270|||W
5VPO|1|RA|G|270|||X
5VPO|1|RA|G|270|||Y
5VPO|1|RA|U|270|||Z
5VPO|1|RA|C|271|||A
5VPO|1|RA|G|271|||B
5VPO|1|RA|U|271|||C
5VPO|1|RA|G|271
*
5VPO|1|RA|C|366
5VPO|1|RA|G|370
5VPO|1|RA|A|371
5VPO|1|RA|G|372
5VPO|1|RA|U|373
5VPO|1|RA|A|374
5VPO|1|RA|C|375
*
5VPO|1|RA|G|399
5VPO|1|RA|G|400
5VPO|1|RA|A|401
5VPO|1|RA|A|402
5VPO|1|RA|U|403
5VPO|1|RA|C|404
5VPO|1|RA|U|405
5VPO|1|RA|G|406
*
5VPO|1|RA|U|421
5VPO|1|RA|A|422
5VPO|1|RA|A|423
5VPO|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9