J5_5VPO_007

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5VPO|1|RA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPO|1|RA|C|601
5VPO|1|RA|G|602
5VPO|1|RA|A|603
5VPO|1|RA|G|604
*
5VPO|1|RA|C|624
5VPO|1|RA|G|625
5VPO|1|RA|U|626
5VPO|1|RA|A|627
5VPO|1|RA|G|628
*
5VPO|1|RA|C|635
5VPO|1|RA|G|636
5VPO|1|RA|A|637
5VPO|1|RA|G|638
*
5VPO|1|RA|C|650
5VPO|1|RA|G|651
5VPO|1|RA|C|652
5VPO|1|RA|A|653
5VPO|1|RA|A|654
5VPO|1|RA|G|654|||A
*
5VPO|1|RA|C|654|||T
5VPO|1|RA|A|654|||U
5VPO|1|RA|A|654|||V
5VPO|1|RA|A|655
5VPO|1|RA|G|656

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15