J5_5VPO_009
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 5VPO|1|RA|A|2062, 5VPO|1|RA|A|2448, 5VPO|1|RA|U|2449, 5VPO|1|RA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VPO|1|RA|A|2057
5VPO|1|RA|A|2058
5VPO|1|RA|A|2059
5VPO|1|RA|A|2060
5VPO|1|RA|G|2061
5VPO|1|RA|A|2062
5VPO|1|RA|C|2063
5VPO|1|RA|C|2064
*
5VPO|1|RA|G|2446
5VPO|1|RA|G|2447
5VPO|1|RA|A|2448
5VPO|1|RA|U|2449
5VPO|1|RA|A|2450
5VPO|1|RA|A|2451
5VPO|1|RA|C|2452
5VPO|1|RA|A|2453
*
5VPO|1|RA|U|2500
5VPO|1|RA|C|2501
5VPO|1|RA|G|2502
5VPO|1|RA|A|2503
5VPO|1|RA|U|2504
5VPO|1|RA|G|2505
5VPO|1|RA|U|2506
5VPO|1|RA|C|2507
*
5VPO|1|RA|G|2582
5VPO|1|RA|G|2583
5VPO|1|RA|U|2584
5VPO|1|RA|U|2585
5VPO|1|RA|C|2586
5VPO|1|RA|A|2587
5VPO|1|RA|G|2588
*
5VPO|1|RA|C|2606
5VPO|1|RA|G|2607
5VPO|1|RA|G|2608
5VPO|1|RA|U|2609
5VPO|1|RA|C|2610
5VPO|1|RA|U|2611
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R0
- 50S ribosomal protein L27
- Chain R5
- 50S ribosomal protein L32
- Chain RD
- 50S ribosomal protein L2
- Chain RE
- 50S ribosomal protein L3
- Chain RF
- 50S ribosomal protein L4
- Chain RW
- 50S ribosomal protein L22
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