J5_5VPP_007

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAGC*GCGUAG*CGAG*CGCAAG*CAAAG

Length

26 nucleotides

Bulged bases

5VPP|1|RA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPP|1|RA|C|601
5VPP|1|RA|G|602
5VPP|1|RA|A|603
5VPP|1|RA|G|604
5VPP|1|RA|C|605
*
5VPP|1|RA|G|623
5VPP|1|RA|C|624
5VPP|1|RA|G|625
5VPP|1|RA|U|626
5VPP|1|RA|A|627
5VPP|1|RA|G|628
*
5VPP|1|RA|C|635
5VPP|1|RA|G|636
5VPP|1|RA|A|637
5VPP|1|RA|G|638
*
5VPP|1|RA|C|650
5VPP|1|RA|G|651
5VPP|1|RA|C|652
5VPP|1|RA|A|653
5VPP|1|RA|A|654
5VPP|1|RA|G|654|||A
*
5VPP|1|RA|C|654|||T
5VPP|1|RA|A|654|||U
5VPP|1|RA|A|654|||V
5VPP|1|RA|A|655
5VPP|1|RA|G|656

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15