3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
Length
37 nucleotides
Bulged bases
5VPP|1|RA|A|2062, 5VPP|1|RA|A|2448, 5VPP|1|RA|U|2449, 5VPP|1|RA|U|2609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5VPP|1|RA|A|2057
5VPP|1|RA|A|2058
5VPP|1|RA|A|2059
5VPP|1|RA|A|2060
5VPP|1|RA|G|2061
5VPP|1|RA|A|2062
5VPP|1|RA|C|2063
5VPP|1|RA|C|2064
*
5VPP|1|RA|G|2446
5VPP|1|RA|G|2447
5VPP|1|RA|A|2448
5VPP|1|RA|U|2449
5VPP|1|RA|A|2450
5VPP|1|RA|A|2451
5VPP|1|RA|C|2452
5VPP|1|RA|A|2453
*
5VPP|1|RA|U|2500
5VPP|1|RA|C|2501
5VPP|1|RA|G|2502
5VPP|1|RA|A|2503
5VPP|1|RA|U|2504
5VPP|1|RA|G|2505
5VPP|1|RA|U|2506
5VPP|1|RA|C|2507
*
5VPP|1|RA|G|2582
5VPP|1|RA|G|2583
5VPP|1|RA|U|2584
5VPP|1|RA|U|2585
5VPP|1|RA|C|2586
5VPP|1|RA|A|2587
5VPP|1|RA|G|2588
*
5VPP|1|RA|C|2606
5VPP|1|RA|G|2607
5VPP|1|RA|G|2608
5VPP|1|RA|U|2609
5VPP|1|RA|C|2610
5VPP|1|RA|U|2611

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R5
50S ribosomal protein L32
Chain RD
50S ribosomal protein L2
Chain RE
50S ribosomal protein L3
Chain RF
50S ribosomal protein L4
Chain RW
50S ribosomal protein L22

Coloring options:

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