J5_5VPP_010
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUUA*UUUG*CG*CG*CGGAUAAAAG
- Length
- 23 nucleotides
- Bulged bases
- 5VPP|1|RA|U|2076, 5VPP|1|RA|G|2428, 5VPP|1|RA|G|2429, 5VPP|1|RA|A|2430, 5VPP|1|RA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VPP|1|RA|C|2073
5VPP|1|RA|U|2074
5VPP|1|RA|U|2075
5VPP|1|RA|U|2076
5VPP|1|RA|A|2077
*
5VPP|1|RA|U|2243
5VPP|1|RA|U|2244
5VPP|1|RA|U|2245
5VPP|1|RA|G|2246
*
5VPP|1|RA|C|2258
5VPP|1|RA|G|2259
*
5VPP|1|RA|C|2281
5VPP|1|RA|G|2282
*
5VPP|1|RA|C|2427
5VPP|1|RA|G|2428
5VPP|1|RA|G|2429
5VPP|1|RA|A|2430
5VPP|1|RA|U|2431
5VPP|1|RA|A|2432
5VPP|1|RA|A|2433
5VPP|1|RA|A|2434
5VPP|1|RA|A|2435
5VPP|1|RA|G|2436
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QV
- Transfer RNA; tRNA
- Chain R0
- 50S ribosomal protein L27
- Chain R1
- 50S ribosomal protein L28
- Chain R6
- 50S ribosomal protein L33
- Chain RD
- 50S ribosomal protein L2
- Chain RP
- 50S ribosomal protein L15
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