J5_5VPP_022
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 5VPP|1|YA|U|271|||C, 5VPP|1|YA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VPP|1|YA|C|268
5VPP|1|YA|U|269
5VPP|1|YA|A|270
5VPP|1|YA|A|270|||A
5VPP|1|YA|A|270|||B
5VPP|1|YA|C|270|||C
*
5VPP|1|YA|G|270|||W
5VPP|1|YA|G|270|||X
5VPP|1|YA|G|270|||Y
5VPP|1|YA|U|270|||Z
5VPP|1|YA|C|271|||A
5VPP|1|YA|G|271|||B
5VPP|1|YA|U|271|||C
5VPP|1|YA|G|271
*
5VPP|1|YA|C|366
5VPP|1|YA|G|370
5VPP|1|YA|A|371
5VPP|1|YA|G|372
5VPP|1|YA|U|373
5VPP|1|YA|A|374
5VPP|1|YA|C|375
*
5VPP|1|YA|G|399
5VPP|1|YA|G|400
5VPP|1|YA|A|401
5VPP|1|YA|A|402
5VPP|1|YA|U|403
5VPP|1|YA|C|404
5VPP|1|YA|U|405
5VPP|1|YA|G|406
*
5VPP|1|YA|U|421
5VPP|1|YA|A|422
5VPP|1|YA|A|423
5VPP|1|YA|G|424
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y1
- 50S ribosomal protein L28
- Chain YI
- 50S ribosomal protein L9
Coloring options: