J5_5WDT_001

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5WDT|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WDT_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0837

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5WDT|1|A|C|47
5WDT|1|A|G|48
5WDT|1|A|A|49
5WDT|1|A|U|50
5WDT|1|A|G|51
5WDT|1|A|A|52
5WDT|1|A|A|53
5WDT|1|A|G|54
*
5WDT|1|A|C|116
5WDT|1|A|G|117
5WDT|1|A|A|118
5WDT|1|A|A|119
5WDT|1|A|U|120
5WDT|1|A|G|121
*
5WDT|1|A|C|130
5WDT|1|A|A|131
*
5WDT|1|A|U|148
5WDT|1|A|A|149
5WDT|1|A|U|150
*
5WDT|1|A|A|176
5WDT|1|A|G|177
5WDT|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34