J5_5WDT_007

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WDT|1|a|C|36
5WDT|1|a|U|37
5WDT|1|a|G|38
5WDT|1|a|G|39
*
5WDT|1|a|C|403
5WDT|1|a|G|404
5WDT|1|a|U|405
5WDT|1|a|G|406
*
5WDT|1|a|C|436
5WDT|1|a|U|437
5WDT|1|a|U|438
5WDT|1|a|U|439
5WDT|1|a|C|440
*
5WDT|1|a|G|497
5WDT|1|a|A|498
5WDT|1|a|A|499
5WDT|1|a|G|500
*
5WDT|1|a|C|545
5WDT|1|a|A|546
5WDT|1|a|A|547
5WDT|1|a|G|548

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12

Chain z

Elongation factor Tu 2