J5_5WE4_001

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5WE4|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WE4_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0615

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5WE4|1|A|C|47
5WE4|1|A|G|48
5WE4|1|A|A|49
5WE4|1|A|U|50
5WE4|1|A|G|51
5WE4|1|A|A|52
5WE4|1|A|A|53
5WE4|1|A|G|54
*
5WE4|1|A|C|116
5WE4|1|A|G|117
5WE4|1|A|A|118
5WE4|1|A|A|119
5WE4|1|A|U|120
5WE4|1|A|G|121
*
5WE4|1|A|C|130
5WE4|1|A|A|131
*
5WE4|1|A|U|148
5WE4|1|A|A|149
5WE4|1|A|U|150
*
5WE4|1|A|A|176
5WE4|1|A|G|177
5WE4|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34