J5_5WE6_001

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5WE6|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WE6_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0885

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5WE6|1|A|C|47
5WE6|1|A|G|48
5WE6|1|A|A|49
5WE6|1|A|U|50
5WE6|1|A|G|51
5WE6|1|A|A|52
5WE6|1|A|A|53
5WE6|1|A|G|54
*
5WE6|1|A|C|116
5WE6|1|A|G|117
5WE6|1|A|A|118
5WE6|1|A|A|119
5WE6|1|A|U|120
5WE6|1|A|G|121
*
5WE6|1|A|C|130
5WE6|1|A|A|131
*
5WE6|1|A|U|148
5WE6|1|A|A|149
5WE6|1|A|U|150
*
5WE6|1|A|A|176
5WE6|1|A|G|177
5WE6|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34