3D structure

PDB id
5WE6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
5WE6|1|A|A|2062, 5WE6|1|A|A|2448, 5WE6|1|A|U|2609
QA status
Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5WE6|1|A|G|2057
5WE6|1|A|A|2058
5WE6|1|A|A|2059
5WE6|1|A|A|2060
5WE6|1|A|G|2061
5WE6|1|A|A|2062
5WE6|1|A|C|2063
5WE6|1|A|C|2064
*
5WE6|1|A|G|2446
5WE6|1|A|G|2447
5WE6|1|A|A|2448
5WE6|1|A|H2U|2449
5WE6|1|A|A|2450
5WE6|1|A|A|2451
5WE6|1|A|C|2452
5WE6|1|A|A|2453
*
5WE6|1|A|U|2500
5WE6|1|A|C|2501
5WE6|1|A|G|2502
5WE6|1|A|2MA|2503
5WE6|1|A|PSU|2504
5WE6|1|A|G|2505
5WE6|1|A|U|2506
5WE6|1|A|C|2507
*
5WE6|1|A|G|2582
5WE6|1|A|G|2583
5WE6|1|A|U|2584
5WE6|1|A|U|2585
5WE6|1|A|U|2586
5WE6|1|A|A|2587
5WE6|1|A|G|2588
*
5WE6|1|A|C|2606
5WE6|1|A|G|2607
5WE6|1|A|G|2608
5WE6|1|A|U|2609
5WE6|1|A|C|2610
5WE6|1|A|C|2611

Current chains

Chain A
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain M
50S ribosomal protein L16
Chain S
50S ribosomal protein L22
Chain v
Transfer RNA; tRNA

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3839 s