J5_5WFK_002

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5WFK|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WFK_002 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0849

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5WFK|1|A|C|47
5WFK|1|A|G|48
5WFK|1|A|A|49
5WFK|1|A|U|50
5WFK|1|A|G|51
5WFK|1|A|A|52
5WFK|1|A|A|53
5WFK|1|A|G|54
*
5WFK|1|A|C|116
5WFK|1|A|G|117
5WFK|1|A|A|118
5WFK|1|A|A|119
5WFK|1|A|U|120
5WFK|1|A|G|121
*
5WFK|1|A|C|130
5WFK|1|A|A|131
*
5WFK|1|A|U|148
5WFK|1|A|A|149
5WFK|1|A|U|150
*
5WFK|1|A|A|176
5WFK|1|A|G|177
5WFK|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34