Loop J5_5WFK

3D structure

PDB id: 5WFK (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: CUGGC*GCGUG*CUUUCAG*CAGAAGAAGCACCGGCUAACUCCG(PSU)GCCAG*CGGUAAUACGGAGGGUGCAAG
Length: 68 nucleotides
Bulged bases: 5WFK|1|a|A|509, 5WFK|1|a|A|532, 5WFK|1|a|U|534
QA status: Modified nucleotides: PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5WFK|1|a|C|36
5WFK|1|a|U|37
5WFK|1|a|G|38
5WFK|1|a|G|39
5WFK|1|a|C|40
*
5WFK|1|a|G|402
5WFK|1|a|C|403
5WFK|1|a|G|404
5WFK|1|a|U|405
5WFK|1|a|G|406
*
5WFK|1|a|C|436
5WFK|1|a|U|437
5WFK|1|a|U|438
5WFK|1|a|U|439
5WFK|1|a|C|440
5WFK|1|a|A|441
5WFK|1|a|G|442
*
5WFK|1|a|C|492
5WFK|1|a|A|493
5WFK|1|a|G|494
5WFK|1|a|A|495
5WFK|1|a|A|496
5WFK|1|a|G|497
5WFK|1|a|A|498
5WFK|1|a|A|499
5WFK|1|a|G|500
5WFK|1|a|C|501
5WFK|1|a|A|502
5WFK|1|a|C|503
5WFK|1|a|C|504
5WFK|1|a|G|505
5WFK|1|a|G|506
5WFK|1|a|C|507
5WFK|1|a|U|508
5WFK|1|a|A|509
5WFK|1|a|A|510
5WFK|1|a|C|511
5WFK|1|a|U|512
5WFK|1|a|C|513
5WFK|1|a|C|514
5WFK|1|a|G|515
5WFK|1|a|PSU|516
5WFK|1|a|G|517
5WFK|1|a|C|518
5WFK|1|a|C|519
5WFK|1|a|A|520
5WFK|1|a|G|521
*
5WFK|1|a|C|528
5WFK|1|a|G|529
5WFK|1|a|G|530||A
5WFK|1|a|U|531
5WFK|1|a|A|532
5WFK|1|a|A|533
5WFK|1|a|U|534
5WFK|1|a|A|535
5WFK|1|a|C|536
5WFK|1|a|G|537
5WFK|1|a|G|538
5WFK|1|a|A|539
5WFK|1|a|G|540
5WFK|1|a|G|541
5WFK|1|a|G|542
5WFK|1|a|U|543
5WFK|1|a|G|544
5WFK|1|a|C|545
5WFK|1|a|A|546
5WFK|1|a|A|547
5WFK|1|a|G|548

Current chains

Chain a: 16S rRNA

Nearby chains

Chain c: 30S ribosomal protein S3
Chain d: 30S ribosomal protein S4
Chain l: 30S ribosomal protein S12
Chain x: mRNA
Chain y: Transfer RNA; tRNA

J5_5WFK_008