J5_5WFS_001

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5WFS|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WFS_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0616

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5WFS|1|A|C|47
5WFS|1|A|G|48
5WFS|1|A|A|49
5WFS|1|A|U|50
5WFS|1|A|G|51
5WFS|1|A|A|52
5WFS|1|A|A|53
5WFS|1|A|G|54
*
5WFS|1|A|C|116
5WFS|1|A|G|117
5WFS|1|A|A|118
5WFS|1|A|A|119
5WFS|1|A|U|120
5WFS|1|A|G|121
*
5WFS|1|A|C|130
5WFS|1|A|A|131
*
5WFS|1|A|U|148
5WFS|1|A|A|149
5WFS|1|A|U|150
*
5WFS|1|A|A|176
5WFS|1|A|G|177
5WFS|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34