J5_5WIT_002
3D structure
- PDB id
- 5WIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 5WIT|1|1A|U|288, 5WIT|1|1A|U|432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5WIT|1|1A|C|257
5WIT|1|1A|U|258
5WIT|1|1A|A|259
5WIT|1|1A|A|260
5WIT|1|1A|A|261
5WIT|1|1A|C|262
*
5WIT|1|1A|G|282
5WIT|1|1A|G|283
5WIT|1|1A|G|284
5WIT|1|1A|U|285
5WIT|1|1A|C|286
5WIT|1|1A|G|287
5WIT|1|1A|U|288
5WIT|1|1A|G|289
*
5WIT|1|1A|C|396
5WIT|1|1A|G|397
5WIT|1|1A|A|398
5WIT|1|1A|G|399
5WIT|1|1A|U|400
5WIT|1|1A|A|401
5WIT|1|1A|C|402
*
5WIT|1|1A|G|426
5WIT|1|1A|G|427
5WIT|1|1A|A|428
5WIT|1|1A|A|429
5WIT|1|1A|U|430
5WIT|1|1A|C|431
5WIT|1|1A|U|432
5WIT|1|1A|G|433
*
5WIT|1|1A|U|448
5WIT|1|1A|A|449
5WIT|1|1A|A|450
5WIT|1|1A|G|451
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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