J5_5WIT_014

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

5WIT|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIT|1|2A|C|601
5WIT|1|2A|G|602
5WIT|1|2A|A|603
5WIT|1|2A|G|604
*
5WIT|1|2A|C|624
5WIT|1|2A|G|625
5WIT|1|2A|U|626
5WIT|1|2A|A|627
5WIT|1|2A|G|628
*
5WIT|1|2A|C|635
5WIT|1|2A|G|636
5WIT|1|2A|A|637
5WIT|1|2A|G|638
*
5WIT|1|2A|C|650
5WIT|1|2A|G|651
5WIT|1|2A|C|652
5WIT|1|2A|A|652|||A
5WIT|1|2A|A|652|||B
5WIT|1|2A|G|652|||C
*
5WIT|1|2A|C|652|||V
5WIT|1|2A|A|653
5WIT|1|2A|A|654
5WIT|1|2A|A|655
5WIT|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15