J5_5WLC_001
3D structure
- PDB id
- 5WLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the small subunit processome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUUACUAG*CAAUCUAUUUCAAAGAAUUCAAACUUG*CUCUCAA*UAG*CAAAAGAGC
- Length
- 55 nucleotides
- Bulged bases
- 5WLC|1|L0|U|294, 5WLC|1|L0|A|295, 5WLC|1|L0|C|296, 5WLC|1|L0|U|297, 5WLC|1|L0|A|298, 5WLC|1|L0|A|309, 5WLC|1|L0|A|313, 5WLC|1|L0|U|314, 5WLC|1|L0|U|315, 5WLC|1|L0|A|322, 5WLC|1|L0|U|325, 5WLC|1|L0|C|326, 5WLC|1|L0|A|329, 5WLC|1|L0|C|330, 5WLC|1|L0|U|331, 5WLC|1|L0|U|332, 5WLC|1|L0|A|396, 5WLC|1|L0|A|461, 5WLC|1|L2|A|60, 5WLC|1|L2|G|61
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5WLC|1|L0|G|291
5WLC|1|L0|A|292
5WLC|1|L0|U|293
5WLC|1|L0|U|294
5WLC|1|L0|A|295
5WLC|1|L0|C|296
5WLC|1|L0|U|297
5WLC|1|L0|A|298
5WLC|1|L0|G|299
*
5WLC|1|L0|C|307
5WLC|1|L0|A|308
5WLC|1|L0|A|309
5WLC|1|L0|U|310
5WLC|1|L0|C|311
5WLC|1|L0|U|312
5WLC|1|L0|A|313
5WLC|1|L0|U|314
5WLC|1|L0|U|315
5WLC|1|L0|U|316
5WLC|1|L0|C|317
5WLC|1|L0|A|318
5WLC|1|L0|A|319
5WLC|1|L0|A|320
5WLC|1|L0|G|321
5WLC|1|L0|A|322
5WLC|1|L0|A|323
5WLC|1|L0|U|324
5WLC|1|L0|U|325
5WLC|1|L0|C|326
5WLC|1|L0|A|327
5WLC|1|L0|A|328
5WLC|1|L0|A|329
5WLC|1|L0|C|330
5WLC|1|L0|U|331
5WLC|1|L0|U|332
5WLC|1|L0|G|333
*
5WLC|1|L0|C|391
5WLC|1|L0|U|392
5WLC|1|L0|C|393
5WLC|1|L0|U|394
5WLC|1|L0|C|395
5WLC|1|L0|A|396
5WLC|1|L0|A|397
*
5WLC|1|L0|U|460
5WLC|1|L0|A|461
5WLC|1|L0|G|462
*
5WLC|1|L2|C|54
5WLC|1|L2|A|55
5WLC|1|L2|A|56
5WLC|1|L2|A|57
5WLC|1|L2|A|58
5WLC|1|L2|G|59
5WLC|1|L2|A|60
5WLC|1|L2|G|61
5WLC|1|L2|C|62
Current chains
- Chain L0
- 5' ETS
- Chain L2
- U3 snoRNA
Nearby chains
- Chain LO
- Utp1
- Chain LS
- Utp18
- Chain LT
- Utp21
- Chain LW
- Utp7
- Chain LZ
- Imp3
- Chain NA
- Mpp10
- Chain SB
- Nop58
- Chain SI
- Bms1
- Chain SL
- Utp24
- Chain SM
- Imp4
- Chain SS
- Utp14
- Chain SY
- Utp11
Coloring options: