J5_5WLC_002

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGUCU*AUAAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

39 nucleotides

Bulged bases

5WLC|1|L1|G|540, 5WLC|1|L1|A|541, 5WLC|1|L1|A|542, 5WLC|1|L1|C|543, 5WLC|1|L1|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WLC|1|L1|C|31
5WLC|1|L1|U|32
5WLC|1|L1|U|33
5WLC|1|L1|G|34
5WLC|1|L1|U|35
5WLC|1|L1|C|36
5WLC|1|L1|U|37
*
5WLC|1|L1|A|471
5WLC|1|L1|U|472
5WLC|1|L1|A|473
5WLC|1|L1|A|474
5WLC|1|L1|A|475
5WLC|1|L1|U|476
5WLC|1|L1|A|477
5WLC|1|L1|A|478
5WLC|1|L1|C|479
*
5WLC|1|L1|G|509
5WLC|1|L1|G|510
5WLC|1|L1|A|511
5WLC|1|L1|A|512
5WLC|1|L1|U|513
5WLC|1|L1|G|514
5WLC|1|L1|A|515
5WLC|1|L1|G|516
*
5WLC|1|L1|C|536
5WLC|1|L1|G|537
5WLC|1|L1|A|538
5WLC|1|L1|G|539
5WLC|1|L1|G|540
5WLC|1|L1|A|541
5WLC|1|L1|A|542
5WLC|1|L1|C|543
5WLC|1|L1|A|544
5WLC|1|L1|A|545
5WLC|1|L1|U|546
*
5WLC|1|L1|A|592
5WLC|1|L1|U|593
5WLC|1|L1|A|594
5WLC|1|L1|G|595

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L9

rpS9_uS4

Chain NB

Sas10

Chain NC

Lcp5

Chain SI

Bms1

Chain SR

rpS23_uS12