J5_5XYM_001

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5XYM|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5XYM_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1173

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5XYM|1|A|C|47
5XYM|1|A|G|48
5XYM|1|A|A|49
5XYM|1|A|U|50
5XYM|1|A|G|51
5XYM|1|A|A|52
5XYM|1|A|A|53
5XYM|1|A|G|54
*
5XYM|1|A|C|116
5XYM|1|A|G|117
5XYM|1|A|A|118
5XYM|1|A|A|119
5XYM|1|A|U|120
5XYM|1|A|G|121
*
5XYM|1|A|C|130
5XYM|1|A|G|131
*
5XYM|1|A|C|150
5XYM|1|A|A|151
5XYM|1|A|C|152
*
5XYM|1|A|G|178
5XYM|1|A|G|179
5XYM|1|A|G|180

Current chains

Chain A

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23