J5_5XYM_004

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|C|697
5XYM|1|A|G|698
5XYM|1|A|A|699
5XYM|1|A|G|700
*
5XYM|1|A|C|721
5XYM|1|A|G|722
5XYM|1|A|C|723
5XYM|1|A|A|724
5XYM|1|A|G|725
*
5XYM|1|A|C|732
5XYM|1|A|G|733
5XYM|1|A|A|734
5XYM|1|A|G|735
*
5XYM|1|A|C|747
5XYM|1|A|G|748
5XYM|1|A|U|749
5XYM|1|A|A|750
5XYM|1|A|U|751
5XYM|1|A|C|752
*
5XYM|1|A|G|769
5XYM|1|A|U|770
5XYM|1|A|G|771
5XYM|1|A|U|772
5XYM|1|A|A|773
5XYM|1|A|G|774

Current chains

Chain A

23S RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15