J5_5XYM_006

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCU

Length

37 nucleotides

Bulged bases

5XYM|1|A|A|2289, 5XYM|1|A|A|2675, 5XYM|1|A|U|2812, 5XYM|1|A|U|2836, 5XYM|1|A|C|2837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|A|2284
5XYM|1|A|A|2285
5XYM|1|A|A|2286
5XYM|1|A|A|2287
5XYM|1|A|G|2288
5XYM|1|A|A|2289
5XYM|1|A|C|2290
5XYM|1|A|C|2291
*
5XYM|1|A|G|2673
5XYM|1|A|G|2674
5XYM|1|A|A|2675
5XYM|1|A|U|2676
5XYM|1|A|A|2677
5XYM|1|A|A|2678
5XYM|1|A|C|2679
5XYM|1|A|A|2680
*
5XYM|1|A|U|2727
5XYM|1|A|C|2728
5XYM|1|A|G|2729
5XYM|1|A|A|2730
5XYM|1|A|U|2731
5XYM|1|A|G|2732
5XYM|1|A|U|2733
5XYM|1|A|C|2734
*
5XYM|1|A|G|2809
5XYM|1|A|G|2810
5XYM|1|A|U|2811
5XYM|1|A|U|2812
5XYM|1|A|U|2813
5XYM|1|A|A|2814
5XYM|1|A|G|2815
*
5XYM|1|A|C|2833
5XYM|1|A|G|2834
5XYM|1|A|G|2835
5XYM|1|A|U|2836
5XYM|1|A|C|2837
5XYM|1|A|U|2838

Current chains

Chain A

23S RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L16

Chain S

50S ribosomal protein L22