J5_5XYU_005
3D structure
- PDB id
- 5XYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of Mycobacterium smegmatis ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CGAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5XYU_005 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.1491
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5XYU|1|A|C|40
5XYU|1|A|U|41
5XYU|1|A|G|42
5XYU|1|A|G|43
*
5XYU|1|A|C|403
5XYU|1|A|G|404
5XYU|1|A|U|405
5XYU|1|A|G|406
*
5XYU|1|A|C|436
5XYU|1|A|U|437
5XYU|1|A|U|438
5XYU|1|A|U|439
5XYU|1|A|C|440
5XYU|1|A|A|441
5XYU|1|A|G|442
*
5XYU|1|A|C|472
5XYU|1|A|A|473
5XYU|1|A|G|474
5XYU|1|A|A|475
5XYU|1|A|A|476
5XYU|1|A|G|477
5XYU|1|A|A|478
5XYU|1|A|A|479
5XYU|1|A|G|480
*
5XYU|1|A|C|525
5XYU|1|A|G|526
5XYU|1|A|A|527
5XYU|1|A|G|528
Current chains
- Chain A
- 16S RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: