J5_5ZEP_002

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

5ZEP|1|A|U|318, 5ZEP|1|A|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ZEP|1|A|C|269
5ZEP|1|A|U|270
5ZEP|1|A|A|271
5ZEP|1|A|A|272
5ZEP|1|A|A|273
5ZEP|1|A|C|274
*
5ZEP|1|A|G|312
5ZEP|1|A|G|313
5ZEP|1|A|G|314
5ZEP|1|A|U|315
5ZEP|1|A|U|316
5ZEP|1|A|G|317
5ZEP|1|A|U|318
5ZEP|1|A|G|319
*
5ZEP|1|A|C|457
5ZEP|1|A|G|458
5ZEP|1|A|A|459
5ZEP|1|A|G|460
5ZEP|1|A|U|461
5ZEP|1|A|A|462
5ZEP|1|A|G|463
*
5ZEP|1|A|U|487
5ZEP|1|A|G|488
5ZEP|1|A|A|489
5ZEP|1|A|A|490
5ZEP|1|A|U|491
5ZEP|1|A|C|492
5ZEP|1|A|U|493
5ZEP|1|A|G|494
*
5ZEP|1|A|U|509
5ZEP|1|A|A|510
5ZEP|1|A|A|511
5ZEP|1|A|G|512

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28