J5_5ZEP_010
3D structure
- PDB id
- 5ZEP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis hibernating state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CGAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5ZEP_010 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.1324
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5ZEP|1|a|C|40
5ZEP|1|a|U|41
5ZEP|1|a|G|42
5ZEP|1|a|G|43
*
5ZEP|1|a|C|403
5ZEP|1|a|G|404
5ZEP|1|a|U|405
5ZEP|1|a|G|406
*
5ZEP|1|a|C|436
5ZEP|1|a|U|437
5ZEP|1|a|U|438
5ZEP|1|a|U|439
5ZEP|1|a|C|440
5ZEP|1|a|A|441
5ZEP|1|a|G|442
*
5ZEP|1|a|C|472
5ZEP|1|a|A|473
5ZEP|1|a|G|474
5ZEP|1|a|A|475
5ZEP|1|a|A|476
5ZEP|1|a|G|477
5ZEP|1|a|A|478
5ZEP|1|a|A|479
5ZEP|1|a|G|480
*
5ZEP|1|a|C|525
5ZEP|1|a|G|526
5ZEP|1|a|A|527
5ZEP|1|a|G|528
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: