J5_6BOK_012

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

6BOK|1|EB|U|271|||D, 6BOK|1|EB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BOK|1|EB|C|268
6BOK|1|EB|U|269
6BOK|1|EB|A|270|||A
6BOK|1|EB|A|270|||B
6BOK|1|EB|A|270|||C
6BOK|1|EB|C|270|||D
*
6BOK|1|EB|G|270|||X
6BOK|1|EB|G|270|||Y
6BOK|1|EB|G|270|||Z
6BOK|1|EB|U|271|||A
6BOK|1|EB|C|271|||B
6BOK|1|EB|G|271|||C
6BOK|1|EB|U|271|||D
6BOK|1|EB|G|271
*
6BOK|1|EB|C|366
6BOK|1|EB|G|370
6BOK|1|EB|A|371
6BOK|1|EB|G|372
6BOK|1|EB|U|373
6BOK|1|EB|A|374
6BOK|1|EB|C|375
*
6BOK|1|EB|G|399
6BOK|1|EB|G|400
6BOK|1|EB|A|401
6BOK|1|EB|A|402
6BOK|1|EB|U|403
6BOK|1|EB|C|404
6BOK|1|EB|U|405
6BOK|1|EB|G|406
*
6BOK|1|EB|U|421
6BOK|1|EB|A|422
6BOK|1|EB|A|423
6BOK|1|EB|G|424

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L28

Chain MB

50S ribosomal protein L9