J5_6BU8_001

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6BU8|1|01|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6BU8_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1295

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6BU8|1|01|C|47
6BU8|1|01|G|48
6BU8|1|01|A|49
6BU8|1|01|U|50
6BU8|1|01|G|51
6BU8|1|01|A|52
6BU8|1|01|A|53
6BU8|1|01|G|54
*
6BU8|1|01|C|116
6BU8|1|01|G|117
6BU8|1|01|A|118
6BU8|1|01|A|119
6BU8|1|01|U|120
6BU8|1|01|G|121
*
6BU8|1|01|C|130
6BU8|1|01|A|131
*
6BU8|1|01|U|148
6BU8|1|01|A|149
6BU8|1|01|U|150
*
6BU8|1|01|A|176
6BU8|1|01|G|177
6BU8|1|01|G|178

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 32

50S ribosomal protein L34