J5_6BU8_005
3D structure
- PDB id
- 6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with S1 domains 1 and 2 (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 6BU8|1|01|A|2062, 6BU8|1|01|A|2448, 6BU8|1|01|U|2449, 6BU8|1|01|U|2609, 6BU8|1|01|C|2610
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6BU8|1|01|G|2057
6BU8|1|01|A|2058
6BU8|1|01|A|2059
6BU8|1|01|A|2060
6BU8|1|01|G|2061
6BU8|1|01|A|2062
6BU8|1|01|C|2063
6BU8|1|01|C|2064
*
6BU8|1|01|G|2446
6BU8|1|01|G|2447
6BU8|1|01|A|2448
6BU8|1|01|U|2449
6BU8|1|01|A|2450
6BU8|1|01|A|2451
6BU8|1|01|C|2452
6BU8|1|01|A|2453
*
6BU8|1|01|U|2500
6BU8|1|01|C|2501
6BU8|1|01|G|2502
6BU8|1|01|A|2503
6BU8|1|01|U|2504
6BU8|1|01|G|2505
6BU8|1|01|U|2506
6BU8|1|01|C|2507
*
6BU8|1|01|G|2582
6BU8|1|01|G|2583
6BU8|1|01|U|2584
6BU8|1|01|U|2585
6BU8|1|01|U|2586
6BU8|1|01|A|2587
6BU8|1|01|G|2588
*
6BU8|1|01|C|2606
6BU8|1|01|G|2607
6BU8|1|01|G|2608
6BU8|1|01|U|2609
6BU8|1|01|C|2610
6BU8|1|01|C|2611
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 04
- 50S ribosomal protein L2
- Chain 05
- 50S ribosomal protein L3
- Chain 06
- 50S ribosomal protein L4
- Chain 14
- 50S ribosomal protein L15
- Chain 15
- 50S ribosomal protein L16
- Chain 21
- 50S ribosomal protein L22
- Chain 30
- 50S ribosomal protein L32
- Chain W
- Transfer RNA; tRNA
- Chain Y
- Transfer RNA; tRNA
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