J5_6C4H_001
3D structure
- PDB id
- 6C4H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 6C4H|1|A|A|2062, 6C4H|1|A|A|2448, 6C4H|1|A|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6C4H|1|A|G|2057
6C4H|1|A|A|2058
6C4H|1|A|A|2059
6C4H|1|A|A|2060
6C4H|1|A|G|2061
6C4H|1|A|A|2062
6C4H|1|A|C|2063
6C4H|1|A|C|2064
*
6C4H|1|A|G|2446
6C4H|1|A|G|2447
6C4H|1|A|A|2448
6C4H|1|A|U|2449
6C4H|1|A|A|2450
6C4H|1|A|A|2451
6C4H|1|A|C|2452
6C4H|1|A|A|2453
*
6C4H|1|A|U|2500
6C4H|1|A|C|2501
6C4H|1|A|G|2502
6C4H|1|A|2MA|2503
6C4H|1|A|PSU|2504
6C4H|1|A|G|2505
6C4H|1|A|U|2506
*
6C4H|1|A|G|2583
6C4H|1|A|U|2584
6C4H|1|A|U|2585
6C4H|1|A|U|2586
6C4H|1|A|A|2587
6C4H|1|A|G|2588
*
6C4H|1|A|C|2606
6C4H|1|A|G|2607
6C4H|1|A|G|2608
6C4H|1|A|U|2609
6C4H|1|A|C|2610
6C4H|1|A|C|2611
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L16
- Chain v
- Peptide chain release factor RF2
- Chain x
- Transfer RNA; tRNA
Coloring options: