J5_6C4I_001

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6C4I|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6C4I_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0504

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6C4I|1|A|C|47
6C4I|1|A|G|48
6C4I|1|A|A|49
6C4I|1|A|U|50
6C4I|1|A|G|51
6C4I|1|A|A|52
6C4I|1|A|A|53
6C4I|1|A|G|54
*
6C4I|1|A|C|116
6C4I|1|A|G|117
6C4I|1|A|A|118
6C4I|1|A|A|119
6C4I|1|A|U|120
6C4I|1|A|G|121
*
6C4I|1|A|C|130
6C4I|1|A|A|131
*
6C4I|1|A|U|148
6C4I|1|A|A|149
6C4I|1|A|U|150
*
6C4I|1|A|A|176
6C4I|1|A|G|177
6C4I|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34