3D structure

PDB id
6C4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the peptidyl transferase center during translation termination
Experimental method
ELECTRON MICROSCOPY
Resolution
3.24 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
Length
35 nucleotides
Bulged bases
6C4I|1|A|A|2062, 6C4I|1|A|A|2448, 6C4I|1|A|U|2609
QA status
Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6C4I|1|A|G|2057
6C4I|1|A|A|2058
6C4I|1|A|A|2059
6C4I|1|A|A|2060
6C4I|1|A|G|2061
6C4I|1|A|A|2062
6C4I|1|A|C|2063
6C4I|1|A|C|2064
*
6C4I|1|A|G|2446
6C4I|1|A|G|2447
6C4I|1|A|A|2448
6C4I|1|A|U|2449
6C4I|1|A|A|2450
6C4I|1|A|A|2451
6C4I|1|A|C|2452
6C4I|1|A|A|2453
*
6C4I|1|A|U|2500
6C4I|1|A|C|2501
6C4I|1|A|G|2502
6C4I|1|A|2MA|2503
6C4I|1|A|PSU|2504
6C4I|1|A|G|2505
6C4I|1|A|U|2506
*
6C4I|1|A|G|2583
6C4I|1|A|U|2584
6C4I|1|A|U|2585
6C4I|1|A|U|2586
6C4I|1|A|A|2587
6C4I|1|A|G|2588
*
6C4I|1|A|C|2606
6C4I|1|A|G|2607
6C4I|1|A|G|2608
6C4I|1|A|U|2609
6C4I|1|A|C|2610
6C4I|1|A|C|2611

Current chains

Chain A
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L32
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain M
50S ribosomal protein L15
Chain N
50S ribosomal protein L16
Chain T
50S ribosomal protein L22
Chain v
Peptide chain release factor 2
Chain x
Transfer RNA; tRNA

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3857 s