J5_6C5L_003

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6C5L|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6C5L_003 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.105

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6C5L|1|BA|C|47
6C5L|1|BA|G|48
6C5L|1|BA|A|49
6C5L|1|BA|U|50
6C5L|1|BA|G|51
6C5L|1|BA|A|52
6C5L|1|BA|A|53
6C5L|1|BA|G|54
*
6C5L|1|BA|C|116
6C5L|1|BA|G|117
6C5L|1|BA|A|118
6C5L|1|BA|A|119
6C5L|1|BA|U|120
6C5L|1|BA|G|121
*
6C5L|1|BA|C|130
6C5L|1|BA|G|131
*
6C5L|1|BA|C|148
6C5L|1|BA|A|149
6C5L|1|BA|C|150
*
6C5L|1|BA|G|176
6C5L|1|BA|G|177
6C5L|1|BA|G|178

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23