J5_6CFJ_014

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAGC*GCAAAG

Length

26 nucleotides

Bulged bases

6CFJ|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFJ|1|2A|C|601
6CFJ|1|2A|G|602
6CFJ|1|2A|A|603
6CFJ|1|2A|G|604
*
6CFJ|1|2A|C|624
6CFJ|1|2A|G|625
6CFJ|1|2A|U|626
6CFJ|1|2A|A|627
6CFJ|1|2A|G|628
*
6CFJ|1|2A|C|635
6CFJ|1|2A|G|636
6CFJ|1|2A|A|637
6CFJ|1|2A|G|638
*
6CFJ|1|2A|C|650
6CFJ|1|2A|G|651
6CFJ|1|2A|C|652
6CFJ|1|2A|A|652|||A
6CFJ|1|2A|A|652|||B
6CFJ|1|2A|G|652|||C
6CFJ|1|2A|C|652|||D
*
6CFJ|1|2A|G|652|||U
6CFJ|1|2A|C|652|||V
6CFJ|1|2A|A|653
6CFJ|1|2A|A|654
6CFJ|1|2A|A|655
6CFJ|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15