3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
Length
33 nucleotides
Bulged bases
6CFK|1|1A|U|288, 6CFK|1|1A|U|432
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6CFK|1|1A|C|257
6CFK|1|1A|U|258
6CFK|1|1A|A|259
6CFK|1|1A|A|260
6CFK|1|1A|A|261
6CFK|1|1A|C|262
*
6CFK|1|1A|G|282
6CFK|1|1A|G|283
6CFK|1|1A|G|284
6CFK|1|1A|U|285
6CFK|1|1A|C|286
6CFK|1|1A|G|287
6CFK|1|1A|U|288
6CFK|1|1A|G|289
*
6CFK|1|1A|C|396
6CFK|1|1A|G|397
6CFK|1|1A|A|398
6CFK|1|1A|G|399
6CFK|1|1A|U|400
6CFK|1|1A|A|401
6CFK|1|1A|C|402
*
6CFK|1|1A|G|426
6CFK|1|1A|G|427
6CFK|1|1A|A|428
6CFK|1|1A|A|429
6CFK|1|1A|U|430
6CFK|1|1A|C|431
6CFK|1|1A|U|432
6CFK|1|1A|G|433
*
6CFK|1|1A|U|448
6CFK|1|1A|A|449
6CFK|1|1A|A|450
6CFK|1|1A|G|451

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 11
50S ribosomal protein L28
Chain 1I
50S ribosomal protein L9

Coloring options:

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