J5_6CFK_011

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

6CFK|1|2A|U|272|||A, 6CFK|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|2A|C|268
6CFK|1|2A|U|269
6CFK|1|2A|A|270
6CFK|1|2A|A|271
6CFK|1|2A|A|271|||A
6CFK|1|2A|C|271|||B
*
6CFK|1|2A|G|271|||V
6CFK|1|2A|G|271|||W
6CFK|1|2A|G|271|||X
6CFK|1|2A|U|271|||Y
6CFK|1|2A|C|271|||Z
6CFK|1|2A|G|272
6CFK|1|2A|U|272|||A
6CFK|1|2A|G|272|||B
*
6CFK|1|2A|C|366
6CFK|1|2A|G|370
6CFK|1|2A|A|371
6CFK|1|2A|G|372
6CFK|1|2A|U|373
6CFK|1|2A|A|374
6CFK|1|2A|C|375
*
6CFK|1|2A|G|399
6CFK|1|2A|G|400
6CFK|1|2A|A|401
6CFK|1|2A|A|402
6CFK|1|2A|U|403
6CFK|1|2A|C|404
6CFK|1|2A|U|405
6CFK|1|2A|G|406
*
6CFK|1|2A|U|421
6CFK|1|2A|A|422
6CFK|1|2A|A|423
6CFK|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9