J5_6CFK_014

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

6CFK|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|2A|C|601
6CFK|1|2A|G|602
6CFK|1|2A|A|603
6CFK|1|2A|G|604
*
6CFK|1|2A|C|624
6CFK|1|2A|G|625
6CFK|1|2A|U|626
6CFK|1|2A|A|627
6CFK|1|2A|G|628
*
6CFK|1|2A|C|635
6CFK|1|2A|G|636
6CFK|1|2A|A|637
6CFK|1|2A|G|638
*
6CFK|1|2A|C|650
6CFK|1|2A|G|651
6CFK|1|2A|C|652
6CFK|1|2A|A|652|||A
6CFK|1|2A|A|652|||B
6CFK|1|2A|G|652|||C
*
6CFK|1|2A|C|652|||V
6CFK|1|2A|A|653
6CFK|1|2A|A|654
6CFK|1|2A|A|655
6CFK|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15