J5_6CFL_011

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

6CFL|1|2A|U|272|||A, 6CFL|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|2A|C|268
6CFL|1|2A|U|269
6CFL|1|2A|A|270
6CFL|1|2A|A|271
6CFL|1|2A|A|271|||A
6CFL|1|2A|C|271|||B
*
6CFL|1|2A|G|271|||V
6CFL|1|2A|G|271|||W
6CFL|1|2A|G|271|||X
6CFL|1|2A|U|271|||Y
6CFL|1|2A|C|271|||Z
6CFL|1|2A|G|272
6CFL|1|2A|U|272|||A
6CFL|1|2A|G|272|||B
*
6CFL|1|2A|C|366
6CFL|1|2A|G|370
6CFL|1|2A|A|371
6CFL|1|2A|G|372
6CFL|1|2A|U|373
6CFL|1|2A|A|374
6CFL|1|2A|C|375
*
6CFL|1|2A|G|399
6CFL|1|2A|G|400
6CFL|1|2A|A|401
6CFL|1|2A|A|402
6CFL|1|2A|U|403
6CFL|1|2A|C|404
6CFL|1|2A|U|405
6CFL|1|2A|G|406
*
6CFL|1|2A|U|421
6CFL|1|2A|A|422
6CFL|1|2A|A|423
6CFL|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9