J5_6CFL_015

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

6CFL|1|2A|G|1758, 6CFL|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6CFL_015 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0613

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6CFL|1|2A|G|1674
6CFL|1|2A|C|1675
6CFL|1|2A|A|1676
6CFL|1|2A|A|1677
6CFL|1|2A|G|1678
6CFL|1|2A|U|1679
6CFL|1|2A|U|1680
6CFL|1|2A|G|1681
6CFL|1|2A|G|1682
*
6CFL|1|2A|U|1706
6CFL|1|2A|G|1707
*
6CFL|1|2A|C|1751
6CFL|1|2A|C|1752
*
6CFL|1|2A|G|1756
6CFL|1|2A|U|1757
6CFL|1|2A|G|1758
6CFL|1|2A|A|1759
6CFL|1|2A|A|1760
6CFL|1|2A|C|1761
6CFL|1|2A|A|1762
6CFL|1|2A|G|1763
6CFL|1|2A|G|1764
*
6CFL|1|2A|C|1988
6CFL|1|2A|G|1989
6CFL|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S Ribosomal Protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA