J5_6CHR_001

3D structure

PDB id

6CHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUG*CC*GA*UUUG*CGAAUGAAAGUG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CHR|1|A|U|26
6CHR|1|A|U|27
6CHR|1|A|G|28
*
6CHR|1|A|C|42
6CHR|1|A|C|43
*
6CHR|1|A|G|63
6CHR|1|A|A|64
*
6CHR|1|A|U|156
6CHR|1|A|U|157
6CHR|1|A|U|158
6CHR|1|A|G|159
*
6CHR|1|A|C|316
6CHR|1|A|G|317
6CHR|1|A|A|318
6CHR|1|A|A|319
6CHR|1|A|U|320
6CHR|1|A|G|321
6CHR|1|A|A|322
6CHR|1|A|A|323
6CHR|1|A|A|324
6CHR|1|A|G|325
6CHR|1|A|U|326
6CHR|1|A|G|327

Current chains

Chain A

RNA (621-MER)

Nearby chains