J5_6CZR_001
3D structure
- PDB id
- 6CZR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of amicetin bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.14 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CG*CAC*GGG
- Length
- 22 nucleotides
- Bulged bases
- 6CZR|1|1A|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6CZR_001 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0949
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6CZR|1|1A|C|45
6CZR|1|1A|G|46
6CZR|1|1A|A|47
6CZR|1|1A|U|48
6CZR|1|1A|G|49
6CZR|1|1A|A|50
6CZR|1|1A|A|51
6CZR|1|1A|G|52
*
6CZR|1|1A|C|113
6CZR|1|1A|G|114
6CZR|1|1A|A|115
6CZR|1|1A|A|116
6CZR|1|1A|U|117
6CZR|1|1A|G|118
*
6CZR|1|1A|C|127
6CZR|1|1A|G|128
*
6CZR|1|1A|C|147
6CZR|1|1A|A|148
6CZR|1|1A|C|149
*
6CZR|1|1A|G|164
6CZR|1|1A|G|165
6CZR|1|1A|G|166
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1X
- 50S ribosomal protein L23
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