3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CG*CAC*GGG
Length
22 nucleotides
Bulged bases
6CZR|1|1A|U|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6CZR_001 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.0949
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6CZR|1|1A|C|45
6CZR|1|1A|G|46
6CZR|1|1A|A|47
6CZR|1|1A|U|48
6CZR|1|1A|G|49
6CZR|1|1A|A|50
6CZR|1|1A|A|51
6CZR|1|1A|G|52
*
6CZR|1|1A|C|113
6CZR|1|1A|G|114
6CZR|1|1A|A|115
6CZR|1|1A|A|116
6CZR|1|1A|U|117
6CZR|1|1A|G|118
*
6CZR|1|1A|C|127
6CZR|1|1A|G|128
*
6CZR|1|1A|C|147
6CZR|1|1A|A|148
6CZR|1|1A|C|149
*
6CZR|1|1A|G|164
6CZR|1|1A|G|165
6CZR|1|1A|G|166

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1X
50S ribosomal protein L23

Coloring options:


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